CD-HIT downloads

CD-HIT is now on GitHub, Please visit for new releases. The new releases included updated cd-hit-auxtools and PSI-cd-hit.

CD-HIT has been hosted on Google Codesi - many thanks to Google. However, Google Codes recently stopped hosting projects. But the old releases are still available from Google Codes .

CD-HIT-454 download

Please first download CD-HIT from Google Code. CD-HIT package include cd-hit-454 clustering program. In addition, please also download the consensus building program, which is used after the clustering. The current release is cdhit-cluster-consensus-2013-03-27.tgz