Roitman S, Flores-Uribe J, et al.
Closing the Gaps on the Viral Photosystem-I PsaDCAB Gene Organization.
Environmental Microbiology. 2015 Aug 26;[more]
Llorens-Marès T, Yooseph S, et al.
Connecting Biodiversity and Potential Functional Role in Modern Euxinic Environments by Microbial Metagenomics.
The ISME Journal. 2015 Jul 01; 9: 1648-61.[more]
Dupont CL, McCrow JP, et al.
Genomes and Gene Expression Across Light and Productivity Gradients in Eastern Subtropical Pacific Microbial Communities.
The ISME Journal. 2015 May 01; 9: 1076-92.[more]
Santoro AE, Dupont CL, et al.
Genomic and Proteomic Characterization of "Candidatus Nitrosopelagicus Brevis": an Ammonia-oxidizing Archaeon from the Open Ocean.
Proceedings of the National Academy of Sciences of the United States of America. 2015 Jan 27; 112: 1173-8.[more]
Larsson J, Celepli N, et al.
Picocyanobacteria Containing a Novel Pigment Gene Cluster Dominate the Brackish Water Baltic Sea.
The ISME Journal. 2014 Sep 01; 8: 1892-903.[more]
Allen AE, Allen LZ, et al.
Lineage Specific Gene Family Enrichment at the Microscale in Marine Systems.
Current Opinion in Microbiology. 2013 Oct 01; 16: 605-17.[more]
Rusch DB, Lombardo MJ, et al.
Draft Genome Sequence of a Single Cell of SAR86 Clade Subgroup IIIa.
Genome Announcements. 2013 Jan 01; 1[more]
Zeigler Allen L, Allen EE, et al.
Influence of Nutrients and Currents on the Genomic Composition of Microbes Across an Upwelling Mosaic.
The ISME Journal. 2012 Jul 01; 6: 1403-14.[more]
Dupont CL, Rusch DB, et al.
Genomic Insights to SAR86, an Abundant and Uncultivated Marine Bacterial Lineage.
The ISME journal. 2012 Jun 01; 6: 1186-99.[more]
Williamson SJ, Allen LZ, et al.
Metagenomic Exploration of Viruses Throughout the Indian Ocean.
PloS One. 2012 Apr 01; 7: e42047.[more]
Wu D, Wu M, et al.
Stalking the Fourth Domain in Metagenomic Data: Searching For, Discovering, and Interpreting Novel, Deep Branches in Marker Gene Phylogenetic Trees.
PloS One. 2011 Sep 01; 6: e18011.[more]
Lorenzi HA, Hoover J, et al.
TheViral MetaGenome Annotation Pipeline(VMGAP):an Automated Tool for the Functional Annotation of Viral Metagenomic Shotgun Sequencing Data.
Standards in Genomic Sciences. 2011 Jul 01; 4: 418-29.[more]
Worden AZ, Dupont C, et al.
Genomes of Uncultured Eukaryotes: Sorting FACS from Fiction.
Genome biology. 2011 May 01; 12: 117.[more]
Gilbert, JA., Dupont, CL.
Microbial Metagenomics: Beyond the Genome
Annu. Rev. Mar. Sci.. 2011 Jan 01; 3: 347-71.[more]
Allen, L. Z., Ishoey, T., et al.
Single Virus Genomics: a New Tool for Virus Discovery
PLoS ONE. 2011 Jan 01; 6(3): e17722.[more]
Yooseph, S., Nealson, K. H., et al.
Genomic and Functional Adaptation In Surface Ocean Planktonic Prokaryotes
Nature. 2010 Nov 04; 468(7320): 60-6.[more]
Goll J, Rusch DB, et al.
METAREP: JCVI Metagenomics Reports--an Open Source Tool for High-performance Comparative Metagenomics.
Bioinformatics (Oxford, England). 2010 Oct 15; 26: 2631-2.[more]
Rusch, D. B., Martiny, A. C., et al.
Characterization of Prochlorococcus Clades from Iron-depleted Oceanic Regions
Proc Natl Acad Sci U S A. 2010 Sep 14; 107(37): 16184-9.[more]
Cuvelier, M. L., Allen, A. E., et al.
Targeted Metagenomics and Ecology of Globally Important Uncultured Eukaryotic Phytoplankton
Proc Natl Acad Sci U S A. 2010 Jul 28; 107(33): 14679-84.[more]
Tanenbaum DM, Goll J, et al.
The JCVI Standard Operating Procedure for Annotating Prokaryotic Metagenomic Shotgun Sequencing Data
Stand. Genomic Sci.. 2010 Mar 25; 2(2)[more]
Shaw, A. K., Halpern, A. L., et al.
It's All Relative: Ranking the Diversity of Aquatic Bacterial Communities
Environ Microbiol. 2008 Sep 10; 10(9): 2200-10.[more]
Yooseph S, Li W, et al.
Gene Identification and Protein Classification in Microbial Metagenomic Sequence Data via Incremental Clustering.
BMC Bioinformatics. 2008 Apr 01; 9(1): 182.[more]
Williamson, S. J., Rusch, D. B., et al.
The Sorcerer II Global Ocean Sampling Expedition: Metagenomic Characterization of Viruses Within Aquatic Microbial Samples
PLoS ONE. 2008 Jan 23; 3(1): e1456.[more]
Sharon, I., Tzahor, S., et al.
Viral Photosynthetic Reaction Center Genes and Transcripts In the Marine Environment
Isme J. 2007 Oct 01; 1(6): 492-501.[more]
Yutin, N., Suzuki, M. T., et al.
Assessing Diversity and Biogeography of Aerobic Anoxygenic Phototrophic Bacteria In Surface Waters of the Atlantic and Pacific Oceans Using the Global Ocean Sampling Expedition Metagenomes
Environ Microbiol. 2007 Jun 01; 9(6): 1464-75.[more]
Seshadri, R., Kravitz, S. A., et al.
CAMERA: A Community Resource for Metagenomics
PLoS Biol. 2007 Mar 13; 5(3): e75.[more]
Kannan, N., Taylor, S. S., et al.
Structural and Functional Diversity of the Microbial Kinome
PLoS Biol. 2007 Mar 01; 5(3): e17.[more]
Venter, J. C., Remington, K., et al.
Environmental Genome Shotgun Sequencing of the Sargasso Sea
Science. 2004 Apr 02; 304(5667): 66-74.[more]
