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Completed Projects

Bacterial

Genomic Analysis of the Classical Bordetella
Transcription Profiling for Natural Product Antibiotic Discovery
Genomic Sequencing of a Diversity of US Military Acinetobacter baumannii-calcoaceticus Complex Isolates
Insights into the pathogenicity and evolution of the Bacillus cereus group of organisms through comprehensive genome sequencing of pathogenic Bacillus cereus isolates and a Bacillus anthracis vaccine strain.

Genome analysis of the human erythrocyte pathogen, Bartonella bacilliformis
The genetic basis of Borrelia burgdorferi variations in human invasiveness and enzootic prevalence through complete genome sequencing and comparative genomics

Genome sequencing and analysis of additional strains in the Burkholderia cepacia complex
Burkholderia mallei Genome Project

Burkholderia morphotype Genome Project
Burkholderia multivorans Genome Project
Burkholderia pseudomallei Genome Project
Genome sequencing of atypical disease-associated and emerging infectious disease isolates of the Biodefense Category B food and water borne priority pathogen Campylobacter jejuni, and related species.
Determining the Genome Sequences of Pathogenic Strains of Clostridium botulinum and Clostridium perfringens
Coxiella burnetii and Rickettsiella grylli Genome Project
Whole Genome Sequencing of Escherichia coli O157:H7 Isolates Involved in the Twenty-Six State Outbreak of August 19-September 5, 2006
Comprehensive Genome Sequencing of Pathogenic Escherichia coli and Shigella

Genome-scale analysis of Shiga-toxin producing E. coli (STEC) O-serogroups
KPC and Klebsiella pneumoniae: virulence and resistance converge

Leptospira Genomics and Human Health
Comparative genomics of Pseudomonas aeruginosa
Comprehensive Genome Sequencing of Nontyphoidal Salmonellae
Genomic sequencing of a diversity of Staphylococcus isolates to determine the genetic basis for drug resistance in S. aureus
Comparative genome sequencing of Streptococcus pneumoniae
Evolutionary genomics and population genetics of\ pathogenic Streptococci
Complete Genomic Sequencing and Comparative Analysis of 14 Serovars of Ureaplasma urealyticum and Ureaplasma parvum as a Means to Assess the Roles of these Emerging Pathogens in Human Disease and their Differential Pathogenicity
Vibrio Genome Project
Genomic Sequencing of an attenuated Yersinia pestis Strain Implicated in the Death of a Researcher
Exploring and understanding Yersinia pestis evolutionary diversity through whole genome sequencing

Fungal

Comparative analysis of Aspergillus terreus
Comparative analysis of the emerging fungal pathogen, Penicillium marneffei
Talaromyces stipitatus Genome Project
Community Resources for Aspergillus fumigatus
Cryptococcus gattii Genomics and Transcriptomics

Parasite

Cryptosporidium muris Genome Sequencing
Comparative Sequencing of Entamoeba spp.
Completion of the Plasmodium vivax Genome Sequence
Genome Sequencing of Clinically Important Strains of Entamoeba histolytica
Genome sequencing of clinically important strains of Toxoplasma gondii
Human and Toxoplasma gondii Genetics and Cellular/Molecular Interactions
Plasmodium Sporozoite
Sequencing the Genomes of the Type I and Type III Lineages of Toxoplasma gondii
Trichomonas vaginalis Genome Project

Virus

Arbovirus Sequencing Project
Arbovirus Sequencing Project II
CDC Division of Viral Diseases-Vaccine Preventable Disease Agents Sequencing Project: Measles, Mumps, Rubella, Rotavirus and Varicella.
Paramyxovirus Sequencing
Rotavirus Sequencing
Sequencing of South American Human Group A Rotavirus genomes
Sequencing of Human Adenovirus clinical isolates from recent and Reference Genomes
Molecular Epidemiology of Enteric Calici Viruses
Coronavirus Sequencing to track Diversity, Virus Adaptation, and Pathogenesis in Humans and Animals.
Complete genome sequencing of a collection of eastern equine encephalitis viruses (EEEV)
Sequencing and variation with Filovirus Stocks
Influenza Genome Sequencing
Role of microbiome diversity, microbial transcriptome and host gene expression in the respiratory track of humans in influenza virus infection.
Role of the Untranslated Regions of the Influenza A Virus Replication and Vaccines
Norovirus Genomics and its Applications to Vaccine Development
The evolution of human respiratory viruses in Peru
Sequence studies of Respiratory Syncytial Virus (RSV) from a 2012-2013 community outbreak in USA to identify signature sequences associated with disease severity and transmission
Rotavirus Genomics and Metagenomics of African Stool Samples

Other

Sequencing of the Genome of the Mosquito, Aedes aegypti
Culex pipiens quinquefasciatus Genome Project
High Throughput Infuenza Processing using Next-Generation Sequencing Technologies
Ixodes scapularis Genome Project
Whole Genome Shotgun Sequencing of the Castor Bean Plant,Ricinus communis cDNA Sequencing and Gene Annotation
Distribution of pre-configured data analysis pipelines and viral genome sequences from GSC projects through Virtual Machine servers on the cloud
Characterization of the changes in the microbial diversity and microbiome expression in the upper respiratory track of ferrets (Mustela putorius furo) during influenza virus infection
High Yield (HY) Reassortants Bioinformatics
Alterations in the nasal microbiome during human influenza infections
Characterization of small non-coding RNAs in the gut microbiome
Synthetic Genomic Tools to Improve Influenza Virus Vaccine Production (SYNFLUENZA)
Synthetic Genomic Tools for Drug Discovery and Natural Products Functional Genomics (CLUSTER)

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