PROVEAN

PROVEAN Human Genome Variants

This tool provides PROVEAN and SIFT predictions for a list of human genome variants.

Input: A list of human genomic variants. See example.
Output: PROVEAN scores and predictions along with available SIFT predictions. See example.

Step 1. Enter a list of genomic coordinates and variants

Paste in your coordinates and variants: [format]

Example (upload example)

1,100382265,C,G,user comment 1 1,100380997,A,G,user comment 2 22,30163533,A,C X,12905093,A,T 2,230633386,G,C 1,100382265,C,A 7,117199641,ATCA,. 7,117199647,TTT,. 10,50184923,TGG,. 12,121438957,ACC,. 1,43217995,G,GCCA 10,102762472,G,GGCG 9,117856130,T,G 9,117856135,C,G

Or upload a file containing variants (5MB limit):

Step 2. Select gene annotation (optional)

Ensembl Gene ID
Associated Gene Name
Ensembl Transcript ID
Transcript Status
Gene Description
% GC Content
Chromosome band
Ensembl Protein Family ID
Ensembl Family Description

UniProt/SwissProt ID
RefSeq Protein ID
MIM Disease Accession
PFAM ID
TIGRFam ID
Interpro ID
GO Term Accession
GO Slim GOA Accession

Parameters

Assembly/Annotation:

Email (optional)

If provided, results will be sent via email.

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